Role of the GRAS transcription factor ATA/RAM1 in the transcriptional reprogramming of arbuscular mycorrhiza in Petunia hybrida.
Identifieur interne : 000C03 ( Main/Exploration ); précédent : 000C02; suivant : 000C04Role of the GRAS transcription factor ATA/RAM1 in the transcriptional reprogramming of arbuscular mycorrhiza in Petunia hybrida.
Auteurs : Mélanie K. Rich [Suisse] ; Pierre-Emmanuel Courty [Suisse, France] ; Christophe Roux [France] ; Didier Reinhardt [Suisse]Source :
- BMC genomics [ 1471-2164 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ARN messager, Mycorhizes, Petunia.
- métabolisme : Facteurs de transcription, Mycorhizes, Petunia, Protéines végétales.
- Gene Ontology, Mutation, Transcription génétique.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : RNA, Messenger.
- chemical , metabolism : Plant Proteins, Transcription Factors.
- genetics : Mycorrhizae, Petunia.
- metabolism : Mycorrhizae, Petunia.
- Gene Ontology, Mutation, Transcription, Genetic.
Abstract
BACKGROUND
Development of arbuscular mycorrhiza (AM) requires a fundamental reprogramming of root cells for symbiosis. This involves the induction of hundreds of genes in the host. A recently identified GRAS-type transcription factor in Petunia hybrida, ATA/RAM1, is required for the induction of host genes during AM, and for morphogenesis of the fungal endosymbiont. To better understand the role of RAM1 in symbiosis, we set out to identify all genes that depend on activation by RAM1 in mycorrhizal roots.
RESULTS
We have carried out a transcript profiling experiment by RNAseq of mycorrhizal plants vs. non-mycorrhizal controls in wild type and ram1 mutants. The results show that the expression of early genes required for AM, such as the strigolactone biosynthetic genes and the common symbiosis signalling genes, is independent of RAM1. In contrast, genes that are involved at later stages of symbiosis, for example for nutrient exchange in cortex cells, require RAM1 for induction. RAM1 itself is highly induced in mycorrhizal roots together with many other transcription factors, in particular GRAS proteins.
CONCLUSION
Since RAM1 has previously been shown to be directly activated by the common symbiosis signalling pathway through CYCLOPS, we conclude that it acts as an early transcriptional switch that induces many AM-related genes, among them genes that are essential for the development of arbuscules, such as STR, STR2, RAM2, and PT4, besides hundreds of additional RAM1-dependent genes the role of which in symbiosis remains to be explored. Taken together, these results indicate that the defect in the morphogenesis of the fungal arbuscules in ram1 mutants may be an indirect consequence of functional defects in the host, which interfere with nutrient exchange and possibly other functions on which the fungus depends.
DOI: 10.1186/s12864-017-3988-8
PubMed: 28789611
PubMed Central: PMC5549340
Affiliations:
- France, Suisse
- Bourgogne, Bourgogne-Franche-Comté, Canton de Fribourg, Midi-Pyrénées, Occitanie (région administrative)
- Castanet-Tolosan, Dijon, Fribourg
- Université de Fribourg
Links toward previous steps (curation, corpus...)
Le document en format XML
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Rich</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Department of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg</wicri:regionArea><orgName type="university">Université de Fribourg</orgName><placeName><settlement type="city">Fribourg</settlement><region nuts="3" type="region">Canton de Fribourg</region></placeName></affiliation></author><author><name sortKey="Courty, Pierre Emmanuel" sort="Courty, Pierre Emmanuel" uniqKey="Courty P" first="Pierre-Emmanuel" last="Courty">Pierre-Emmanuel Courty</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Department of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg</wicri:regionArea><orgName type="university">Université de Fribourg</orgName><placeName><settlement type="city">Fribourg</settlement><region nuts="3" type="region">Canton de Fribourg</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Present address: Agroécologie, AgroSupDijon, CNRS, INRA, Université de Bourgogne Franche-Comté, 21000, Dijon, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Present address: Agroécologie, AgroSupDijon, CNRS, INRA, Université de Bourgogne Franche-Comté, 21000, Dijon</wicri:regionArea><placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region><region type="old region" nuts="2">Bourgogne</region><settlement type="city">Dijon</settlement></placeName></affiliation></author><author><name sortKey="Roux, Christophe" sort="Roux, Christophe" uniqKey="Roux C" first="Christophe" last="Roux">Christophe Roux</name><affiliation wicri:level="3"><nlm:affiliation>Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 Chemin de Borde Rouge-Auzeville, 31326, Castanet-Tolosan, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 Chemin de Borde Rouge-Auzeville, 31326, Castanet-Tolosan</wicri:regionArea><placeName><region type="region" nuts="2">Occitanie (région administrative)</region><region type="old region" nuts="2">Midi-Pyrénées</region><settlement type="city">Castanet-Tolosan</settlement></placeName></affiliation></author><author><name sortKey="Reinhardt, Didier" sort="Reinhardt, Didier" uniqKey="Reinhardt D" first="Didier" last="Reinhardt">Didier Reinhardt</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg, Switzerland. didier.reinhardt@unifr.ch.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Department of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg</wicri:regionArea><orgName type="university">Université de Fribourg</orgName><placeName><settlement type="city">Fribourg</settlement><region nuts="3" type="region">Canton de Fribourg</region></placeName></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Gene Ontology (MeSH)</term><term>Mutation (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (metabolism)</term><term>Petunia (genetics)</term><term>Petunia (metabolism)</term><term>Plant Proteins (metabolism)</term><term>RNA, Messenger (genetics)</term><term>Transcription Factors (metabolism)</term><term>Transcription, Genetic (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN messager (génétique)</term><term>Facteurs de transcription (métabolisme)</term><term>Gene Ontology (MeSH)</term><term>Mutation (MeSH)</term><term>Mycorhizes (génétique)</term><term>Mycorhizes (métabolisme)</term><term>Petunia (génétique)</term><term>Petunia (métabolisme)</term><term>Protéines végétales (métabolisme)</term><term>Transcription génétique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Messenger</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term><term>Petunia</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN messager</term><term>Mycorhizes</term><term>Petunia</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Mycorrhizae</term><term>Petunia</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Facteurs de transcription</term><term>Mycorhizes</term><term>Petunia</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Ontology</term><term>Mutation</term><term>Transcription, Genetic</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Gene Ontology</term><term>Mutation</term><term>Transcription génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Development of arbuscular mycorrhiza (AM) requires a fundamental reprogramming of root cells for symbiosis. This involves the induction of hundreds of genes in the host. A recently identified GRAS-type transcription factor in Petunia hybrida, ATA/RAM1, is required for the induction of host genes during AM, and for morphogenesis of the fungal endosymbiont. To better understand the role of RAM1 in symbiosis, we set out to identify all genes that depend on activation by RAM1 in mycorrhizal roots.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>We have carried out a transcript profiling experiment by RNAseq of mycorrhizal plants vs. non-mycorrhizal controls in wild type and ram1 mutants. The results show that the expression of early genes required for AM, such as the strigolactone biosynthetic genes and the common symbiosis signalling genes, is independent of RAM1. In contrast, genes that are involved at later stages of symbiosis, for example for nutrient exchange in cortex cells, require RAM1 for induction. RAM1 itself is highly induced in mycorrhizal roots together with many other transcription factors, in particular GRAS proteins.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>Since RAM1 has previously been shown to be directly activated by the common symbiosis signalling pathway through CYCLOPS, we conclude that it acts as an early transcriptional switch that induces many AM-related genes, among them genes that are essential for the development of arbuscules, such as STR, STR2, RAM2, and PT4, besides hundreds of additional RAM1-dependent genes the role of which in symbiosis remains to be explored. Taken together, these results indicate that the defect in the morphogenesis of the fungal arbuscules in ram1 mutants may be an indirect consequence of functional defects in the host, which interfere with nutrient exchange and possibly other functions on which the fungus depends.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28789611</PMID><DateCompleted><Year>2018</Year><Month>03</Month><Day>23</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>18</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>08</Month><Day>08</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>Role of the GRAS transcription factor ATA/RAM1 in the transcriptional reprogramming of arbuscular mycorrhiza in Petunia hybrida.</ArticleTitle><Pagination><MedlinePgn>589</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-017-3988-8</ELocationID><Abstract><AbstractText Label="BACKGROUND">Development of arbuscular mycorrhiza (AM) requires a fundamental reprogramming of root cells for symbiosis. This involves the induction of hundreds of genes in the host. A recently identified GRAS-type transcription factor in Petunia hybrida, ATA/RAM1, is required for the induction of host genes during AM, and for morphogenesis of the fungal endosymbiont. To better understand the role of RAM1 in symbiosis, we set out to identify all genes that depend on activation by RAM1 in mycorrhizal roots.</AbstractText><AbstractText Label="RESULTS">We have carried out a transcript profiling experiment by RNAseq of mycorrhizal plants vs. non-mycorrhizal controls in wild type and ram1 mutants. The results show that the expression of early genes required for AM, such as the strigolactone biosynthetic genes and the common symbiosis signalling genes, is independent of RAM1. In contrast, genes that are involved at later stages of symbiosis, for example for nutrient exchange in cortex cells, require RAM1 for induction. RAM1 itself is highly induced in mycorrhizal roots together with many other transcription factors, in particular GRAS proteins.</AbstractText><AbstractText Label="CONCLUSION">Since RAM1 has previously been shown to be directly activated by the common symbiosis signalling pathway through CYCLOPS, we conclude that it acts as an early transcriptional switch that induces many AM-related genes, among them genes that are essential for the development of arbuscules, such as STR, STR2, RAM2, and PT4, besides hundreds of additional RAM1-dependent genes the role of which in symbiosis remains to be explored. Taken together, these results indicate that the defect in the morphogenesis of the fungal arbuscules in ram1 mutants may be an indirect consequence of functional defects in the host, which interfere with nutrient exchange and possibly other functions on which the fungus depends.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rich</LastName><ForeName>Mélanie K</ForeName><Initials>MK</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Courty</LastName><ForeName>Pierre-Emmanuel</ForeName><Initials>PE</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg, Switzerland.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Present address: Agroécologie, AgroSupDijon, CNRS, INRA, Université de Bourgogne Franche-Comté, 21000, Dijon, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Roux</LastName><ForeName>Christophe</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 Chemin de Borde Rouge-Auzeville, 31326, Castanet-Tolosan, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Reinhardt</LastName><ForeName>Didier</ForeName><Initials>D</Initials><Identifier Source="ORCID">0000-0003-3495-6783</Identifier><AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Rte Albert-Gockel 3, 1700, Fribourg, Switzerland. didier.reinhardt@unifr.ch.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate 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MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032306" MajorTopicYN="N">Petunia</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014158" MajorTopicYN="Y">Transcription, Genetic</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Arbuscular mycorrhiza</Keyword><Keyword MajorTopicYN="Y">GRAS transcription factor</Keyword><Keyword MajorTopicYN="Y">Petunia hybrida</Keyword><Keyword MajorTopicYN="Y">RAM1</Keyword><Keyword MajorTopicYN="Y">Symbiosis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>03</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>08</Month><Day>01</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>8</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>8</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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Rich</name></region><name sortKey="Courty, Pierre Emmanuel" sort="Courty, Pierre Emmanuel" uniqKey="Courty P" first="Pierre-Emmanuel" last="Courty">Pierre-Emmanuel Courty</name><name sortKey="Reinhardt, Didier" sort="Reinhardt, Didier" uniqKey="Reinhardt D" first="Didier" last="Reinhardt">Didier Reinhardt</name></country><country name="France"><region name="Bourgogne-Franche-Comté"><name sortKey="Courty, Pierre Emmanuel" sort="Courty, Pierre Emmanuel" uniqKey="Courty P" first="Pierre-Emmanuel" last="Courty">Pierre-Emmanuel Courty</name></region><name sortKey="Roux, Christophe" sort="Roux, Christophe" uniqKey="Roux C" first="Christophe" last="Roux">Christophe Roux</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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